Farhan Ali, Patterns of Change in Nucleotide Diversity Over Gene Length, Genome Biology and Evolution, Volume 16, Issue 4, April 2024, evae078. PDF

Lynch M, Ali F, Lin T, Wang Y, Ni J, Long H. The divergence of mutation rates and spectra across the Tree of Life. EMBO Rep. 2023 Oct 9;24(10):e57561. PDF

Maitra, A., Raghav, S.K., Dalal, A.B., Ali, F., Paynter, V.M., Paul, D., Biswas, N.K., Ghosh, A., Jani, K., Chinnaswamy, S., Pati, S., Sahu, A., Mitra, D., Bhat, M.K., Mayor, S., Sarin, A., Sauche, Y.S., Seshasayee, A.S., Palakodeti, D., Bashyam, M.D., Parida, A., & Das, S. (2020). PAN-INDIA 1000 SARS-CoV-2 RNA Genome Sequencing Reveals Important Insights into the Outbreak. bioRxiv. PDF

Ali, F., Sharda, Sai Narain Seshasayee, A. (2020). SARS-CoV-2 sequence typing, evolution and signatures of selection using CoVa, a Python-based command-line utility. bioRxiv. PDF

Farhan Ali, Aswin Sai Narain Seshasayee, Dynamics of genetic variation in transcription factors and its implications for the evolution of regulatory networks in Bacteria, Nucleic Acids Research, Volume 48, Issue 8, 07 May 2020, Pages 4100–4114. PDF

Chib S, Ali F, Seshasayee ASN. 2017. Genomewide Mutational Diversity in Escherichia coli Population Evolving in Prolonged Stationary Phase. mSphere 2:10.1128/msphere.00059-17. PDF

Chatterjee A, Ali F, Bange D, Kondabagil K. Isolation and complete genome sequencing of Mimivirus bombay, a Giant Virus in sewage of Mumbai, India. Genom Data. 2016 May 31;9:1-3. PDF

Chatterjee A, Ali F, Bange D, Kondabagil K. 2016. Complete Genome Sequence of a New Megavirus Family Member Isolated from an Inland Water Lake for the First Time in India. Genome Announc 4:10.1128/genomea.00402-16. PDF