Chen Y, Huang J, Qin H, Zhang K, Fu Y, Li J, Wang R, Chen K, Xiong J, Miao W, Wang G*, Zhang L. Chromosome-level genome assembly of Cryptosporidium parvum by long-read sequencing of ten oocysts. Sci Data. 2024 Nov 26;11(1):1287. PDF
Qin W, Hu C, Gu S, Zhang J, Jiang C, Chai X, Liao Z, Yang M, Zhou F, Kang D, Pan T, Xiao Y, Chen K, Wang G, Ge F, Huang K, Zhang C, Warren A, Xiong J, Miao W. Dynamic shape-shifting of the single-celled eukaryotic predator Lacrymaria via unconventional cytoskeletal components. Curr Biol. 2024 Nov 4;34(21):4869-4883.e6. PDF
Jiang C, Gu S, Pan T, Wang X, Qin W, Wang G, Gao X, Zhang J, Chen K, Warren A, Xiong J, Miao W. Dynamics and timing of diversification events of ciliated eukaryotes from a large phylogenomic perspective. Mol Phylogenet Evol. 2024 Aug;197:108110. PDF
Zhao W, Xiong J, Li M, Bu X, Jiang C, Wang G, Zhang J, Li W, Zou H, Miao W, Chen K, Wang G. Genome assembly of a symbiotic balantidia (Balantidium ctenopharyngodoni) in fish hindgut. Sci Data. 2024 Mar 28;11(1):323. PDF
Gao X, Chen K, Xiong J, Zou D, Yang F, Ma Y, Jiang C, Gao X, Wang G, Gu S, Zhang P, Luo S, Huang K, Bao Y, Zhang Z, Ma L, Miao W. The P10K database: a data portal for the protist 10 000 genomes project. Nucleic Acids Res. 2024 Jan 5;52(D1):D747-D755. PDF
Fu L, Gu C, Mochizuki K, Xiong J, Miao W, Wang G*. The genome-wide meiotic recombination landscape in ciliates and its implications for crossover regulation and genome evolution. J Genet Genomics. 2024 Mar;51(3):302-312. PDF
Zhao L, He K, Jiang C, Wang G, Hu S, Wang T, Qian W, Wei Z, Xiong J, Miao W, Yan W. Comparative Genomic and Transcriptomic Profiling Revealed the Molecular Basis of Starch Promoting the Growth and Proliferation of Balantioides coli. Animals (Basel). 2023 May 11;13(10):1608. PDF
Jiang C, Wang G#, Zhang J, Gu S, Wang X, Qin W, Chen K, Yuan D, Chai X, Yang M, Zhou F, Xiong J, Miao W. iGDP: An integrated genome decontamination pipeline for wild ciliated microeukaryotes. Mol Ecol Resour. 2023 Jul;23(5):1182-1193. PDF
Zhang J, Qin W, Hu C, Gu S, Chai X, Yang M, Zhou F, Wang X, Chen K, Yan G, Wang G, Jiang C, Warren A, Xiong J, Miao W. Giant proteins in a giant cell: Molecular basis of ultrafast Ca2+-dependent cell contraction. Sci Adv. 2023 Feb 22;9(8):eadd6550. PDF
Wang J, Chen K, Yang J, Zhang S, Li Y, Liu G, Luo J, Yin H, Wang G*, Guan G. Comparative genomic analysis of Babesia duncani responsible for human babesiosis. BMC Biol. 2022 Jul 5;20(1):153. PDF
Fu YX, Wang G#, Chen K, Ma X, Liu SQ, Miao W. Amitosis as a strategy of cell division-Insight from the proliferation of Tetrahymena thermophila macronuclei. Theor Popul Biol. 2022 Jun;145:52-62. PDF
Zhou Y, Fu L, Mochizuki K, Xiong J, Miao W, Wang G*. Absolute quantification of chromosome copy numbers in the polyploid macronucleus of Tetrahymena thermophila at the single-cell level. J Eukaryot Microbiol. 2022 Jul;69(4):e12907. PDF
Wang J, Chen K, Ren Q, Zhang Y, Liu J, Wang G, Liu A, Li Y, Liu G, Luo J, Miao W, Xiong J, Yin H, Guan G. Systematic Comparison of the Performances of De Novo Genome Assemblers for Oxford Nanopore Technology Reads From Piroplasm. Front Cell Infect Microbiol. 2021 Aug 16;11:696669. PDF
Wang G, Wang S, Chai X, Zhang J, Yang W, Jiang C, Chen K, Miao W, Xiong J. A strategy for complete telomere-to-telomere assembly of ciliate macronuclear genome using ultra-high coverage Nanopore data. Comput Struct Biotechnol J. 2021 Apr 9;19:1928-1932. PDF
Wang G, Fu L, Xiong J, Mochizuki K, Fu Y, Miao W. Identification and Characterization of Base-Substitution Mutations in the Macronuclear Genome of the Ciliate Tetrahymena thermophila. Genome Biol Evol. 2021 Jan 7;13(1):evaa232. PDF
Wang G, Chen K, Zhang J, Deng S, Xiong J, He X, Fu Y, Miao W. Drivers of Mating Type Composition in Tetrahymena thermophila. Genome Biol Evol. 2020 Dec 6;12(12):2328-2343. PDF
Zhang J, Chen K, Jiang C, Yang W, Gu S, Wang G, Lu Y, Miao W, Xiong J. Bacteria-Derived Hemolysis-Related Genes Widely Exist in Scuticociliates. Microorganisms. 2020 Nov 22;8(11):1838. PDF
Han X, Yan G, Ma Y, Miao W, Wang G*. Sequencing and characterization of the macronuclear rDNA minichromosome of the protozoan Tetrahymena pyriformis. Int J Biol Macromol. 2020 Mar 15;147:576-581. PDF
Chen K, Wang G*, Xiong J, Jiang C, Miao W. Exploration of Genetic Variations through Single-cell Whole-genome Sequencing in the Model Ciliate Tetrahymena thermophila. J Eukaryot Microbiol. 2019 Nov;66(6):954-965. PDF
Xiong J, Yang W, Chen K, Jiang C, Ma Y, Chai X, Yan G, Wang G, Yuan D, Liu Y, Bidwell SL, Zafar N, Hadjithomas M, Krishnakumar V, Coyne RS, Orias E, Miao W. Hidden genomic evolution in a morphospecies-The landscape of rapidly evolving genes in Tetrahymena. PLoS Biol. 2019 Jun 3;17(6):e3000294. PDF
Yang W, Jiang C, Zhu Y, Chen K, Wang G, Yuan D, Miao W, Xiong J. Tetrahymena Comparative Genomics Database (TCGD): a community resource for Tetrahymena. Database (Oxford). 2019 Jan 1;2019:baz029. PDF
Jiang CQ, Wang GY, Xiong J, Yang WT, Sun ZY, Feng JM, Warren A, Miao W. Insights into the origin and evolution of Peritrichia (Oligohymenophorea, Ciliophora) based on analyses of morphology and phylogenomics. Mol Phylogenet Evol. 2019 Mar;132:25-35. PDF
Feng L, Wang G, Hamilton EP, Xiong J, Yan G, Chen K, Chen X, Dui W, Plemens A, Khadr L, Dhanekula A, Juma M, Dang HQ, Kapler GM, Orias E, Miao W, Liu Y. A germline-limited piggyBac transposase gene is required for precise excision in Tetrahymena genome rearrangement. Nucleic Acids Res. 2017 Sep 19;45(16):9481-9502. PDF
Xiong J, Wang G, Cheng J, Tian M, Pan X, Warren A, Jiang C, Yuan D, Miao W. Genome of the facultative scuticociliatosis pathogen Pseudocohnilembus persalinus provides insight into its virulence through horizontal gene transfer. Sci Rep. 2015 Oct 21;5:15470. PDF
Xiong J, Lu Y, Feng J, Yuan D, Tian M, Chang Y, Fu C, Wang G, Zeng H, Miao W. Tetrahymena functional genomics database (TetraFGD): an integrated resource for Tetrahymena functional genomics. Database (Oxford). 2013 Mar 12;2013:bat008. PDF